STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_09906RING-6. (352 aa)    
Predicted Functional Partners:
VDBG_01621
Mitotic checkpoint protein BUB3.
   
 
 0.954
VDBG_04723
Splicing factor 3B subunit 1.
   
    0.565
VDBG_06363
Splicing factor 3A subunit 2.
   
 
 0.487
VDBG_01100
C2H2-type domain-containing protein.
      
 0.485
VDBG_00753
Protein YIP.
      
 0.440
VDBG_02254
RRM domain-containing protein.
   
 
 0.433
VDBG_08765
Pre-mRNA-splicing factor rse-1.
  
  
 0.413
VDBG_03669
54S ribosomal protein L9.
   
  
 0.408
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.