STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_09934Vta1 domain-containing protein. (253 aa)    
Predicted Functional Partners:
VDBG_01917
Uncharacterized protein.
    
 0.999
VDBG_02863
Charged multivesicular body protein.
   
 0.999
VDBG_03269
Vacuolar protein sorting-associated protein; Belongs to the AAA ATPase family.
   
 0.999
VDBG_01030
DUF292 domain-containing protein.
   
 
 0.967
VDBG_06482
GTP cyclohydrolase I.
   
   0.946
VDBG_02850
Uncharacterized protein.
    
   0.942
VDBG_00559
Vacuolar-sorting protein snf7.
    
 0.913
VDBG_07830
DOA4-independent degradation protein.
    
 0.893
VDBG_05235
Vacuolar protein-sorting-associated protein.
    
 0.857
VDBG_03677
Charged multivesicular body protein.
     
 0.841
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.