STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_10056Glutamyl-tRNA(Gln) amidotransferase subunit A. (720 aa)    
Predicted Functional Partners:
VDBG_01631
Methylcrotonoyl-CoA carboxylase beta chain.
  
 0.990
VDBG_03509
Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.953
VDBG_02755
Acetyl-CoA carboxylase.
  
 0.893
VDBG_02756
Acetyl-CoA carboxylase.
  
 0.893
VDBG_09198
Biotin-protein ligase ligase.
  
 
 0.872
VDBG_00050
Glucose-methanol-choline oxidoreductase.
  
 
 0.854
VDBG_06650
NAD-specific glutamate dehydrogenase.
  
 
 0.854
VDBG_03010
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.827
VDBG_05024
Pyruvate carboxylase.
 
 0.824
VDBG_05026
Uncharacterized protein.
  
 0.824
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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