STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VDBG_10206Dihydroceramidase. (210 aa)    
Predicted Functional Partners:
VDBG_01425
Sphingoid long chain base kinase.
    
 0.961
VDBG_08059
Neutral ceramidase.
    
 0.961
VDBG_00624
Sphingolipid delta(4)-desaturase; Delta(4)-fatty-acid desaturase which introduces a double bond at the 4-position in the long-chain base (LCB) of ceramides.
   
 
 0.942
VDBG_05537
Long-chain base protein.
     
 0.940
VDBG_02819
Sphingolipid C4-hydroxylase SUR2; Belongs to the sterol desaturase family.
     
 0.936
VDBG_02291
Sphingosine N-acyltransferase lag1.
    
 0.928
VDBG_07031
Sphingosine N-acyltransferase lac1.
    
 0.928
VDBG_06901
3-ketodihydrosphingosine reductase tsc10.
     
 0.920
VDBG_07422
Serine palmitoyltransferase.
   
  
 0.634
VDBG_06298
Uncharacterized protein.
    
 0.573
Your Current Organism:
Verticillium alfalfae
NCBI taxonomy Id: 526221
Other names: V. alfalfae VaMs.102, Verticillium alfalfae VaMs.102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.