STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACS78561.1Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: regulatory protein Crp; cyclic nucleotide-binding; KEGG: bmc:BAbS19_II08700 bacterial regulatory protein, Crp family. (232 aa)    
Predicted Functional Partners:
ACS79423.1
Transcriptional regulator, TrmB; PFAM: cyclic nucleotide-binding; transcriptional regulator TrmB; SMART: cyclic nucleotide-binding; KEGG: dvl:Dvul_2554 cyclic nucleotide-binding protein.
  
     0.723
ACS78478.1
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: dde:Dde_1200 CRP/FNR family transcriptional regulator.
  
     0.709
ACS79050.1
Adenylate/guanylate cyclase with GAF and PAS/PAC sensors; KEGG: sfu:Sfum_0907 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein; PAS fold domain protein; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; GAF domain protein.
 
 0.702
ACS80911.1
Adenylate/guanylate cyclase with Chase sensor; PFAM: CHASE2 domain protein; adenylyl cyclase class-3/4/guanylyl cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: dol:Dole_0034 TPR repeat-containing adenylate/guanylate cyclase.
 
 0.674
ACS78956.1
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; response regulator receiver; KEGG: pol:Bpro_4465 adenylate/guanylate cyclase.
 
 0.569
ACS81777.1
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; KEGG: scl:sce6484 phosphoprotein phosphatase.
  
     0.566
ACS78560.1
KEGG: pfs:PFLU1909 hypothetical protein.
       0.536
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.531
ACS79733.1
PFAM: TPR repeat-containing protein; KEGG: hypothetical protein.
  
 0.529
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.516
Your Current Organism:
Desulfovibrio salexigens
NCBI taxonomy Id: 526222
Other names: D. salexigens DSM 2638, Desulfovibrio salexigens ATCC 14822, Desulfovibrio salexigens DSM 2638, Desulfovibrio salexigens str. DSM 2638, Desulfovibrio salexigens strain DSM 2638
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