Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACS80856.1PFAM: Ribosomal small subunit Rsm22; KEGG: dvm:DvMF_1399 ribosomal small subunit Rsm22. (413 aa)    
Predicted Functional Partners:
ACS80855.1
KEGG: dde:Dde_2711 iron-sulfur cluster-binding protein, putative.
       0.830
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: dde:Dde_1099 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.803
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
    
 
 0.796
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
    
   0.777
ACS80733.1
PFAM: beta-lactamase domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dat:HRM2_35830 putative metallo-beta-lactamase superfamily protein.
    
   0.776
rpsB
TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: dde:Dde_1133 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
    
   0.765
ACS78417.1
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: dde:Dde_0374 rhodanese-like protein.
   
   0.764
ACS80328.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; SMART: Rhodanese domain protein; KEGG: ppd:Ppro_1974 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
   0.764
ACS80640.1
PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: Rhodanese domain protein; KEGG: dol:Dole_1052 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
   0.764
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
    
 
 0.763
Your Current Organism:
Desulfovibrio salexigens
NCBI taxonomy Id: 526222
Other names: D. salexigens DSM 2638, Desulfovibrio salexigens ATCC 14822, Desulfovibrio salexigens DSM 2638, Desulfovibrio salexigens str. DSM 2638, Desulfovibrio salexigens strain DSM 2638
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