STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_0446PFAM: Cupin 2 conserved barrel domain protein; KEGG: bhy:BHWA1_00278 hypothetical protein. (149 aa)    
Predicted Functional Partners:
Bmur_2511
PFAM: Carboxymuconolactone decarboxylase; KEGG: bhy:BHWA1_00655 4-carboxymuconolactone decarboxylase.
   
 0.730
Bmur_0445
Flavodoxin; KEGG: bhy:BHWA1_00279 flavodoxin.
       0.666
Bmur_2513
KEGG: bhy:BHWA1_00653 hypothetical protein.
 
     0.638
Bmur_0447
PFAM: protein of unknown function DUF323; KEGG: fsu:Fisuc_1693 protein of unknown function DUF323.
       0.582
Bmur_1095
Cytidyltransferase-related domain protein; KEGG: bhy:BHWA1_02421 nicotinamide-nucleotide adenylyltransferase; TIGRFAM: cytidyltransferase-related domain protein; PFAM: cytidylyltransferase.
   
    0.422
Bmur_0076
Transcriptional regulator, GntR family; TIGRFAM: trehalose operon repressor; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; KEGG: bhy:BHWA1_00504 trehalose operon repressor; SMART: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH.
  
    0.407
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.