STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_0447PFAM: protein of unknown function DUF323; KEGG: fsu:Fisuc_1693 protein of unknown function DUF323. (489 aa)    
Predicted Functional Partners:
Bmur_0151
PFAM: sulfatase; KEGG: bhy:BHWA1_00429 sulfatase.
 
   0.870
Bmur_0448
KEGG: bhy:BHWA1_01747 hypothetical protein.
 
     0.654
Bmur_0446
PFAM: Cupin 2 conserved barrel domain protein; KEGG: bhy:BHWA1_00278 hypothetical protein.
       0.582
Bmur_0445
Flavodoxin; KEGG: bhy:BHWA1_00279 flavodoxin.
 
    
0.542
Bmur_2508
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bfs:BF2136 short chain dehydrogenase.
 
    0.446
Bmur_0689
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
     
 0.445
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
     
 0.419
Bmur_2506
KEGG: bhy:BHWA1_00658 hypothetical protein.
     0.412
Bmur_2556
KEGG: sfu:Sfum_3948 hypothetical protein.
     
 0.402
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.