STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_0777PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: bhy:BHWA1_02490 DH oxidase. (452 aa)    
Predicted Functional Partners:
hisI
phosphoribosyl-ATP diphosphatase; KEGG: bhy:BHWA1_02118 bifunctional phosphoribosyl- AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; In the N-terminal section; belongs to the PRA-CH family.
  
    0.620
rpmJ
KEGG: fsu:Fisuc_1400 ribosomal protein L36; TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
   
   0.573
Bmur_2026
PFAM: acyl-CoA dehydrogenase domain protein; Rubredoxin-type Fe(Cys)4 protein; Electron transfer flavoprotein alpha subunit; KEGG: bhy:BHWA1_02228 acyl-CoA dehydrogenase.
  
 
 0.536
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
   0.529
Bmur_0220
SMART: beta-lactamase domain protein; KEGG: bhy:BHWA1_00115 metallo-beta-lactamase.
   
 0.528
Bmur_1817
SMART: beta-lactamase domain protein; KEGG: bhy:BHWA1_01360 beta-lactamase domain protein.
   
 0.528
Bmur_1818
KEGG: bhy:BHWA1_01359 hypothetical protein.
   
 0.525
Bmur_0810
PFAM: alpha/beta hydrolase fold; KEGG: bhy:BHWA1_02452 hypothetical protein.
  
 
 0.482
Bmur_1522
TIGRFAM: riboflavin synthase, alpha subunit; KEGG: bhy:BHWA1_02027 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein.
   
    0.476
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
   
    0.476
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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