STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_0923PFAM: extracellular solute-binding protein family 1; KEGG: bhy:BHWA1_02571 periplasmic-iron-binding protein BitB. (347 aa)    
Predicted Functional Partners:
Bmur_0925
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bhy:BHWA1_02569 binding-protein-dependent transport system, inner membrane component.
 
 
 0.992
Bmur_0924
PFAM: extracellular solute-binding protein family 1; KEGG: bhy:BHWA1_02570 periplasmic-iron-binding protein BitB.
 
  
 
0.957
Bmur_1829
KEGG: bhy:BHWA1_00870 putative ABC transporter BitD; PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.949
Bmur_0922
KEGG: bhy:BHWA1_02572 hypothetical protein.
       0.505
Bmur_1936
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.447
Bmur_1018
PFAM: OmpA/MotB domain protein; KEGG: bhy:BHWA1_01416 putative flagellar motor protein.
    
   0.426
Bmur_2601
PFAM: OmpA/MotB domain protein; KEGG: bhy:BHWA1_00206 outer membrane protein OmpA family.
    
   0.426
Bmur_0921
PFAM: N-6 DNA methylase; protein of unknown function DUF450; KEGG: syp:SYNPCC7002_F0089 type I restriction modification system, N-6 DNA methylase.
       0.407
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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