STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_1142PFAM: amine oxidase; KEGG: ypb:YPTS_1046 O-antigen synthesis protein WbyH. (428 aa)    
Predicted Functional Partners:
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.796
Bmur_1143
PFAM: glycosyl transferase family 2; KEGG: cyh:Cyan8802_2789 glycosyl transferase family 2.
  
  
 0.782
Bmur_1146
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
       0.730
Bmur_1145
PFAM: NAD-dependent epimerase/dehydratase; KEGG: bhy:BHWA1_02680 NAD dependent epimerase/dehydratase family superfamily protein.
  
  
 0.721
Bmur_1144
PFAM: glycosyl transferase family 2; KEGG: mar:MAE_10940 glycosyl transferase.
  
  
 0.716
Bmur_1812
PFAM: phosphoribosyltransferase; KEGG: bhy:BHWA1_01366 putative phosphoribosyltransferace.
  
    0.642
Bmur_1147
PFAM: NAD-dependent epimerase/dehydratase; KEGG: bhy:BHWA1_02680 NAD dependent epimerase/dehydratase family superfamily protein.
  
  
 0.532
Bmur_0896
PFAM: conserved hypothetical protein; KEGG: bhy:BHWA1_01288 hypothetical protein.
 
    0.464
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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