STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_1359KEGG: dsa:Desal_3560 membrane protein. (347 aa)    
Predicted Functional Partners:
Bmur_0898
KEGG: bhy:BHWA1_01286 TPR domain-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat.
  
 
 0.548
Bmur_1358
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: bhy:BHWA1_02024 transcriptional regulator, LysR family.
  
    0.540
Bmur_0120
PFAM: Methyltransferase type 12; KEGG: eel:EUBELI_00268 hypothetical protein.
   
 
 0.516
Bmur_2513
KEGG: bhy:BHWA1_00653 hypothetical protein.
 
    0.516
Bmur_0055
PFAM: glycosyl transferase group 1; KEGG: bhy:BHWA1_00551 mannosyltransferase.
   
 
 0.470
Bmur_0136
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: rpr:RP336 hypothetical protein.
   
 
 0.470
Bmur_2852
PFAM: glycosyl transferase group 1; KEGG: bhy:BHWA1_00225 hypothetical protein.
   
 
 0.470
Bmur_0441
KEGG: bhy:BHWA1_00282 hypothetical protein.
 
    0.421
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.