Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bmur_1600 | Bmur_1602 | Bmur_1600 | Bmur_1602 | KEGG: bhy:BHWA1_01512 thermonuclease family protein. | PFAM: extracellular solute-binding protein family 5; KEGG: bhy:BHWA1_02059 oligopeptide ABC transporter periplasmic subunit. | 0.445 |
Bmur_1600 | Bmur_1936 | Bmur_1600 | Bmur_1936 | KEGG: bhy:BHWA1_01512 thermonuclease family protein. | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.457 |
Bmur_1600 | thiE | Bmur_1600 | Bmur_1601 | KEGG: bhy:BHWA1_01512 thermonuclease family protein. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.775 |
Bmur_1600 | topA | Bmur_1600 | Bmur_2420 | KEGG: bhy:BHWA1_01512 thermonuclease family protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.471 |
Bmur_1602 | Bmur_1600 | Bmur_1602 | Bmur_1600 | PFAM: extracellular solute-binding protein family 5; KEGG: bhy:BHWA1_02059 oligopeptide ABC transporter periplasmic subunit. | KEGG: bhy:BHWA1_01512 thermonuclease family protein. | 0.445 |
Bmur_1602 | thiE | Bmur_1602 | Bmur_1601 | PFAM: extracellular solute-binding protein family 5; KEGG: bhy:BHWA1_02059 oligopeptide ABC transporter periplasmic subunit. | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.441 |
Bmur_1936 | Bmur_1600 | Bmur_1936 | Bmur_1600 | Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | KEGG: bhy:BHWA1_01512 thermonuclease family protein. | 0.457 |
thiE | Bmur_1600 | Bmur_1601 | Bmur_1600 | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | KEGG: bhy:BHWA1_01512 thermonuclease family protein. | 0.775 |
thiE | Bmur_1602 | Bmur_1601 | Bmur_1602 | Thiamine-phosphate pyrophosphorylase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | PFAM: extracellular solute-binding protein family 5; KEGG: bhy:BHWA1_02059 oligopeptide ABC transporter periplasmic subunit. | 0.441 |
topA | Bmur_1600 | Bmur_2420 | Bmur_1600 | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | KEGG: bhy:BHWA1_01512 thermonuclease family protein. | 0.471 |