STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_1663PFAM: Lipoprotein LpqB, GerMN domain; KEGG: bhy:BHWA1_01526 hypothetical protein. (600 aa)    
Predicted Functional Partners:
Bmur_0094
KEGG: bhy:BHWA1_00486 putative methyl-accepting chemotaxis protein.
  
 
   0.793
Bmur_2633
KEGG: bhy:BHWA1_00795 fibronectin type III domain containing protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.
  
   
 0.776
Bmur_1655
TIGRFAM: metal dependent phophohydrolase; KEGG: bhy:BHWA1_02074 hypothetical protein.
  
     0.773
Bmur_0150
PFAM: Apolipoprotein A1/A4/E; RepA / Rep KID repeat- containing protein; KEGG: bhy:BHWA1_00453 hypothetical protein.
 
     0.772
Bmur_0733
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
     0.772
Bmur_2447
KEGG: bhy:BHWA1_00966 TPR domain-containing protein.
  
     0.772
Bmur_2735
PFAM: TPR repeat-containing protein; KEGG: bhy:BHWA1_00511 TPR domain-containing protein.
  
     0.770
Bmur_0476
KEGG: bhy:BHWA1_00247 hypothetical protein.
 
     0.769
Bmur_0653
KEGG: bhy:BHWA1_00802 putative transcript cleavage factor/TPR domain containing protein.
  
     0.769
Bmur_2768
Putative transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; KEGG: bhy:BHWA1_00239 putative cAMP-binding protein.
  
     0.769
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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