Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_2178KEGG: bhy:BHWA1_01296 hypothetical protein. (313 aa)    
Predicted Functional Partners:
Bmur_1641
KEGG: bhy:BHWA1_01628 TPR domain-containing protein; PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
  
 
 0.870
Bmur_1653
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; KEGG: bhy:BHWA1_01633 TPR domain-containing protein.
  
 
 0.870
Bmur_0898
KEGG: bhy:BHWA1_01286 TPR domain-containing protein; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat.
  
 
 0.558
Bmur_0192
KEGG: pmt:PMT0296 TPR repeat-containing protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
   
 
 0.543
Bmur_1014
PFAM: TPR repeat-containing protein; KEGG: bhy:BHWA1_01978 hypothetical protein.
   
 
 0.543
Bmur_1342
KEGG: bhy:BHWA1_01603 TPR domain-containing protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
   
 
 0.543
Bmur_2180
KEGG: bhy:BHWA1_02524 hypothetical protein.
 
 
  
0.497
Bmur_2179
KEGG: bhy:BHWA1_02523 hypothetical protein.
      
0.491
Bmur_2322
KEGG: bhy:BHWA1_02529 TPR domain-containing protein; PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide repeat.
    
 
 0.473
Bmur_2424
KEGG: rbo:A1I_03215 capsular polysaccharide biosynthesis protein.
  
 
 0.450
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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