Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_2196KEGG: bhy:BHWA1_02438 hypothetical protein. (145 aa)    
Predicted Functional Partners:
Bmur_2578
KEGG: bhy:BHWA1_00030 hypothetical protein.
  
     0.663
Bmur_0259
KEGG: bhy:BHWA1_00082 hydrolase 3, haloacid dehalogenase-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3.
  
     0.633
Bmur_0258
KEGG: bhy:BHWA1_00081 hydrolase 3, haloacid dehalogenase-like hydrolase; TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3.
  
     0.615
Bmur_0241
PFAM: protein of unknown function DUF308 membrane; KEGG: bhy:BHWA1_00095 hypothetical protein.
  
     0.512
Bmur_2197
KEGG: bhy:BHWA1_02440 hypothetical protein.
       0.446
Bmur_2195
KEGG: bhy:BHWA1_02438 hypothetical protein.
 
    
0.439
Bmur_1626
KEGG: bhy:BHWA1_01954 hypothetical protein.
  
     0.433
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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