Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_2289KEGG: hypothetical protein. (284 aa)    
Predicted Functional Partners:
Bmur_2287
KEGG: rme:Rmet_6243 hypothetical protein.
       0.773
Bmur_2288
KEGG: hypothetical protein.
       0.773
Bmur_2290
Hypothetical protein; KEGG: ate:Athe_1169 chromosome segregation protein SMC.
       0.773
Bmur_2291
KEGG: cth:Cthe_1731 HNH endonuclease; PFAM: HNH endonuclease; SMART: HNH nuclease.
       0.757
Bmur_2283
KEGG: bwe:BcerKBAB4_0827 group-specific protein.
       0.678
Bmur_2284
KEGG: conserved hypothetical protein; K12840 splicing factor 45.
       0.678
Bmur_2285
KEGG: predicted protein.
       0.678
Bmur_2286
KEGG: hypothetical protein.
       0.678
Bmur_2282
KEGG: bpy:Bphyt_7293 hypothetical protein.
       0.624
Bmur_2292
KEGG: cac:CAC1607 hypothetical protein.
       0.578
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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