STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_2431Selenium metabolism protein YedF; KEGG: bhy:BHWA1_02475 protein of unknown function with an N-terminal SirA-like domain; TIGRFAM: selenium metabolism protein YedF; PFAM: SirA family protein; Belongs to the sulfur carrier protein TusA family. (189 aa)    
Predicted Functional Partners:
Bmur_2430
Cysteine desulfurase; KEGG: bhy:BHWA1_02474 aminotransferase class-V; PFAM: aminotransferase class V.
 
 
 
 0.893
Bmur_0688
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
   
 
 0.880
Bmur_0617
PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: 2-hydroxyglutaryl-CoA dehydratase D-component.
 
    0.782
Bmur_0601
KEGG: bhy:BHWA1_01026 hypothetical protein.
 
  
 0.769
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
 
   
 0.755
Bmur_2429
KEGG: bhy:BHWA1_02473 hypothetical protein.
       0.754
selA
L-seryl-tRNA selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.729
Bmur_0487
KEGG: bhy:BHWA1_00362 selenocysteine-specific translation elongation factor; TIGRFAM: selenocysteine-specific translation elongation factor; PFAM: protein synthesis factor GTP-binding; Elongation factor SelB winged helix 3; elongation factor Tu domain 2 protein.
 
   
 0.699
Bmur_2555
KEGG: cdl:CDR20291_2256 hypothetical protein.
  
  
 0.686
Bmur_0618
KEGG: cpy:Cphy_1489 cysteine desulfurase family protein; TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase class V.
 
 
 
 0.682
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.