STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_2461PFAM: conserved hypothetical protein; KEGG: bhy:BHWA1_02463 predicted Rossmann fold nucleotide-binding protein; Belongs to the LOG family. (220 aa)    
Predicted Functional Partners:
Bmur_2462
KEGG: bhy:BHWA1_02462 hypothetical protein.
       0.784
Bmur_2460
PFAM: protein of unknown function DUF74; KEGG: bhy:BHWA1_02464 hypothetical protein; Belongs to the UPF0145 family.
       0.736
mnmA
tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
  
    0.436
Bmur_2458
PFAM: protein of unknown function DUF1058; KEGG: bhy:BHWA1_02612 aerotolerance-related exported protein BatE containing TPR domain.
 
     0.431
Bmur_2705
PFAM: ribonucleotide reductase; KEGG: bhy:BHWA1_00404 ribonucleoside-diphosphate reductase, beta subunit.
  
    0.415
Bmur_2704
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
    0.406
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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