STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bmur_2557KEGG: kol:Kole_1972 helicase domain protein; PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicase. (1117 aa)    
Predicted Functional Partners:
Bmur_0024
SMART: helicase c2; DEAD-like helicase; KEGG: bhy:BHWA1_00600 helicase.
   
 0.981
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.976
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.975
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.969
Bmur_0731
SNF2-related protein; KEGG: bhy:BHWA1_00700 HepA, superfamily II D/R helicase, SNF2 family; PFAM: SNF2-related protein; helicase domain protein; SNF2 helicase associated domain protein; SMART: DEAD-like helicase; helicase domain protein.
 
 
 0.923
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.876
Bmur_2547
KEGG: dth:DICTH_1776 type IIS restriction endonuclease, putative.
 
    0.873
Bmur_1902
KEGG: bhy:BHWA1_01313 hypothetical protein.
 
    0.842
Bmur_1897
KEGG: bhy:BHWA1_01313 hypothetical protein.
 
   
 0.770
Bmur_1892
PFAM: protein of unknown function DUF450; N-6 DNA methylase; Eco57I restriction endonuclease; KEGG: bhy:BHWA1_01318 restriction enzyme methylase subunit.
 
   
 0.746
Your Current Organism:
Brachyspira murdochii
NCBI taxonomy Id: 526224
Other names: B. murdochii DSM 12563, Brachyspira murdochii 56-150, Brachyspira murdochii ATCC 51284, Brachyspira murdochii CIP 105832, Brachyspira murdochii DSM 12563, Brachyspira murdochii str. DSM 12563, Brachyspira murdochii strain DSM 12563
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.