STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_0082PFAM: ANTAR domain protein; GAF domain protein; SMART: GAF domain protein; KEGG: kra:Krad_4213 putative GAF sensor protein. (270 aa)    
Predicted Functional Partners:
Gobs_2787
KEGG: kra:Krad_4493 hypothetical protein.
 
     0.656
Gobs_1117
KEGG: kra:Krad_4493 hypothetical protein.
 
     0.640
Gobs_2469
KEGG: kra:Krad_4493 hypothetical protein.
 
     0.629
Gobs_0081
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: nca:Noca_1263 response regulator receiver.
       0.548
Gobs_3068
KEGG: kra:Krad_4493 hypothetical protein.
 
     0.455
Gobs_0488
TIGRFAM: PPOX class probable F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: rha:RHA1_ro02455 hypothetical protein.
  
     0.442
Gobs_4249
KEGG: tfu:Tfu_0618 hypothetical protein.
  
     0.418
Gobs_3764
KEGG: rha:RHA1_ro00354 hypothetical protein.
  
     0.413
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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