Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_0309PFAM: glycoside hydrolase family 2 sugar binding; glycoside hydrolase family 2 TIM barrel; KEGG: scl:sce3052 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 2 family. (604 aa)    
Predicted Functional Partners:
Gobs_4056
TIGRFAM: galactokinase; PFAM: Galactokinase galactose-binding domain; GHMP kinase; GHMP kinase domain protein; KEGG: nfa:nfa45050 putative galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
  
 0.735
Gobs_1299
PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin; KR domain protein; FAD-binding 9 siderophore- interacting domain protein; GntR domain protein; short- chain dehydrogenase/reductase SDR; KEGG: sen:SACE_4377 oxidoreductase FAD-binding region.
     
 0.604
Gobs_0116
KEGG: mva:Mvan_1931 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; GAF domain protein; Sulfate transporter/antisigma-factor antagonist STAS; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing prot [...]
     
 0.571
Gobs_0307
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: stp:Strop_0141 3-ketoacyl-(acyl-carrier- protein) reductase.
     
 0.532
Gobs_0308
PFAM: MaoC domain protein dehydratase; KEGG: sen:SACE_7302 MaoC-like dehydratase.
       0.519
Gobs_4607
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_5254 major facilitator superfamily permease.
  
 
 0.499
Gobs_0306
KEGG: nca:Noca_2847 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.497
Gobs_2633
Beta-amylase; PFAM: glycoside hydrolase family 14; KEGG: cbi:CLJ_B1243 beta-amylase.
 
 
 0.488
Gobs_1988
PFAM: major facilitator superfamily MFS_1; KEGG: ara:Arad_9746 florfenicol/chloramphenicol resistance transporter protein.
 
 
 0.460
Gobs_0310
PFAM: extracellular solute-binding protein family 5; KEGG: kra:Krad_3863 extracellular solute-binding protein.
       0.441
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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