STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_0311PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kra:Krad_3862 binding-protein-dependent transport systems inner membrane component. (313 aa)    
Predicted Functional Partners:
Gobs_0310
PFAM: extracellular solute-binding protein family 5; KEGG: kra:Krad_3863 extracellular solute-binding protein.
 
 0.977
Gobs_0312
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kra:Krad_3861 binding-protein-dependent transport systems inner membrane component.
  
 0.977
Gobs_0313
KEGG: kra:Krad_3860 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.962
Gobs_1081
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mab:MAB_0428 peptide ABC transporter DppC.
  
 0.941
Gobs_0314
KEGG: kra:Krad_3859 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.938
Gobs_0482
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_0259 oligopeptide ABC transporter (permease).
  
 0.937
Gobs_0483
KEGG: stp:Strop_0219 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.903
Gobs_0484
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sen:SACE_0261 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.902
Gobs_1082
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: sgr:SGR_2415 putative peptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.902
Gobs_0480
PFAM: extracellular solute-binding protein family 5; KEGG: sen:SACE_0257 dipeptide ABC transporter substrate-binding protein.
 
 0.891
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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