STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_0448PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: sma:SAV_7440 hypothetical protein. (357 aa)    
Predicted Functional Partners:
Gobs_0449
PFAM: DoxX family protein; KEGG: sen:SACE_0149 DoxX.
       0.790
Gobs_0450
PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sen:SACE_2253 putative glycerophosphatase.
  
    0.679
ybeY
Protein of unknown function UPF0054; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
   
    0.654
Gobs_3869
KEGG: nfa:nfa6330 hypothetical protein.
  
     0.567
Gobs_1947
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: stp:Strop_1546 ATP-dependent DNA ligase.
  
   
 0.509
Gobs_3213
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: sen:SACE_5742 putative glutamate synthase(NADPH) large subunit.
  
    0.496
hisI
Phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
  
  
 0.478
hisB
PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: tfu:Tfu_1152 imidazoleglycerol-phosphate dehydratase.
  
  
 0.459
lig
DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
  
   
 0.444
Gobs_0451
PFAM: protein of unknown function DUF1470; KEGG: sen:SACE_5922 hypothetical protein.
       0.440
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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