Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_0469KEGG: mab:MAB_0267 hypothetical protein. (165 aa)    
Predicted Functional Partners:
Gobs_0470
TIGRFAM: HAD-superfamily hydrolase, phosphatase; HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sal:Sala_2121 epoxide hydrolase domain- containing phosphatase.
 
     0.815
Gobs_0468
PFAM: O-methyltransferase family 3; KEGG: fal:FRAAL5009 caffeoyl O-methyltransferase (partial match).
       0.787
Gobs_4393
KEGG: nfa:nfa9540 hypothetical protein.
  
     0.767
Gobs_4085
PFAM: amino acid-binding ACT domain protein; KEGG: sen:SACE_6175 amino acid-binding ACT.
  
     0.757
Gobs_5081
Glycoprotein; KEGG: rha:RHA1_ro03643 glycoprotein.
  
     0.755
Gobs_1124
KEGG: sen:SACE_1036 hypothetical protein.
  
     0.750
Gobs_1007
KEGG: cmi:CMM_0897 hypothetical protein.
  
     0.728
Gobs_4078
KEGG: sen:SACE_6160 hypothetical protein.
  
     0.709
Gobs_4283
PFAM: Lipoprotein LpqB, beta-propeller domain-like; Lipoprotein LpqB, GerMN domain; KEGG: rop:ROP_63870 hypothetical protein.
  
     0.700
Gobs_4255
KEGG: rha:RHA1_ro06355 hypothetical protein.
  
     0.695
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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