STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_0506PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; KEGG: sen:SACE_0309 peptide hydrolase. (595 aa)    
Predicted Functional Partners:
Gobs_0507
PFAM: protein of unknown function DUF21; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: nca:Noca_2719 hypothetical protein.
       0.785
Gobs_0508
PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; KEGG: fre:Franean1_1954 hypothetical protein.
       0.785
Gobs_4624
KEGG: sen:SACE_7115 aerial mycelium formation protein.
  
     0.696
Gobs_3138
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sen:SACE_2077 putative transcriptional regulator (DNA-binding protein).
  
     0.605
Gobs_5081
Glycoprotein; KEGG: rha:RHA1_ro03643 glycoprotein.
  
     0.591
Gobs_2804
KEGG: sen:SACE_3300 hypothetical protein.
  
     0.574
Gobs_0773
KEGG: sen:SACE_3415 hypothetical protein.
  
     0.537
Gobs_4115
KEGG: sen:SACE_6241 M protein.
  
     0.528
Gobs_3269
KEGG: fre:Franean1_5105 hypothetical protein.
  
     0.507
Gobs_0629
KEGG: mva:Mvan_5366 hypothetical protein.
  
     0.505
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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