Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_0670KEGG: sma:SAV_184 hypothetical protein. (270 aa)    
Predicted Functional Partners:
Gobs_0672
PFAM: Type II secretion system F domain; KEGG: saq:Sare_4969 type II secretion system protein.
 
  
 0.980
Gobs_0673
PFAM: Type II secretion system F domain; KEGG: stp:Strop_4455 type II secretion system protein.
 
  
 0.980
Gobs_0676
PFAM: TadE family protein; KEGG: sco:SCP1.174 hypothetical protein.
 
  
 0.960
Gobs_0675
PFAM: TadE family protein; KEGG: sma:SAV_189 hypothetical protein.
 
  
 0.959
Gobs_0669
PFAM: SAF domain protein; KEGG: nca:Noca_2220 SAF domain-containing protein.
 
    0.958
Gobs_0668
KEGG: sco:SCP1.166 putative ATP/GTP-binding protein.
 
     0.948
Gobs_0677
KEGG: sma:SAV_191 hypothetical protein.
 
     0.933
Gobs_0678
Transcriptional regulator, SARP family; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: nca:Noca_2229 peptidoglycan-binding LysM.
 
     0.924
Gobs_0671
PFAM: type II secretion system protein E; KEGG: stp:Strop_4457 type II secretion system protein E.
 
  
 0.915
Gobs_0667
KEGG: stp:Strop_4461 hypothetical protein.
       0.778
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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