Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_0776KEGG: nfa:nfa53000 hypothetical protein. (121 aa)    
Predicted Functional Partners:
Gobs_1888
KEGG: saq:Sare_1473 hypothetical protein.
  
     0.601
Gobs_3972
PFAM: GCN5-related N-acetyltransferase; KEGG: ace:Acel_1521 GCN5-related N- acetyltransferase.
  
     0.558
Gobs_3461
PFAM: protein of unknown function DUF164; KEGG: stp:Strop_3356 hypothetical protein.
  
     0.538
Gobs_0509
PFAM: metallophosphoesterase; KEGG: nfa:nfa3370 hypothetical protein.
  
     0.532
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
  
 0.501
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
  
 0.500
Gobs_3515
KEGG: saq:Sare_3627 hypothetical protein.
  
     0.498
Gobs_4633
Domain of unknown function DUF1794; May play a role in the intracellular transport of hydrophobic ligands.
 
     0.463
Gobs_2686
KEGG: stp:Strop_2249 hypothetical protein.
  
     0.458
Gobs_2647
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: stp:Strop_2159 hypothetical protein.
  
     0.457
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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