Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_0806KEGG: rop:ROP_50270 hypothetical protein. (71 aa)    
Predicted Functional Partners:
Gobs_3340
PFAM: cytochrome c oxidase subunit III; KEGG: msm:MSMEG_4260 cytochrome c oxidase subunit 3.
    
   0.927
Gobs_3343
PFAM: Cytochrome b/b6 domain; KEGG: saq:Sare_3524 cytochrome b/b6 domain- containing protein.
    
   0.927
Gobs_3344
Integral membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
    
   0.927
Gobs_3976
KEGG: rop:ROP_66210 hypothetical membrane protein.
    
   0.927
Gobs_3341
PFAM: cytochrome c class I; KEGG: nfa:nfa17270 putative cytochrome c component.
    
   0.894
Gobs_3342
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: rer:RER_35970 menaquinol-cytochrome c reductase iron-sulfur protein.
    
   0.894
Gobs_3345
TIGRFAM: cytochrome c oxidase, subunit II; PFAM: cytochrome c oxidase subunit II; KEGG: rer:RER_36020 cytochrome c oxidase subunit II.
    
   0.894
Gobs_1349
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
   0.790
Gobs_3917
Cytochrome c oxidase, subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
    
   0.790
Gobs_1544
KEGG: similar to KIAA0545 protein.
    
   0.752
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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