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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_0809KEGG: fal:FRAAL0713 hypothetical protein. (189 aa)    
Predicted Functional Partners:
Gobs_0808
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mpa:MAP3240 hypothetical protein.
 
     0.846
Gobs_3411
KEGG: krh:KRH_22220 hypothetical protein.
  
     0.650
Gobs_4829
KEGG: mjl:Mjls_2771 hypothetical protein.
  
     0.623
Gobs_2733
PFAM: Domain of unknown function DUF1918; KEGG: fra:Francci3_4452 hypothetical protein.
  
     0.586
Gobs_2945
KEGG: fre:Franean1_3090 hypothetical protein.
  
     0.554
Gobs_0330
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fra:Francci3_3798 endonuclease/exonuclease/phosphatase.
 
     0.544
Gobs_4745
KEGG: nca:Noca_3724 putative phosphodiesterase.
  
     0.543
Gobs_2118
PFAM: protein of unknown function DUF1360; KEGG: fal:FRAAL4124 hypothetical protein.
 
     0.525
Gobs_4654
KEGG: fre:Franean1_6479 hypothetical protein.
 
     0.512
Gobs_0462
PFAM: glycosyl transferase family 9; KEGG: sco:SCO6188 transferase.
  
     0.504
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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