Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_0849Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: kra:Krad_3554 deoxyribodipyrimidine photo- lyase. (454 aa)    
Predicted Functional Partners:
Gobs_4821
PFAM: chalcone and stilbene synthase domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: stp:Strop_4264 chalcone/stilbene synthase domain-containing protein.
    
 
 0.739
Gobs_0647
PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; KEGG: kra:Krad_3082 deoxyribodipyrimidine photolyase-related protein.
 
   
 0.659
Gobs_4538
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: ace:Acel_0284 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
       0.626
Gobs_1656
PFAM: TspO/MBR family protein; KEGG: art:Arth_1976 TspO and MBR like proteins.
  
  
 0.622
Gobs_0850
KEGG: sen:SACE_3941 hypothetical protein.
       0.619
Gobs_0848
PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: kra:Krad_3521 DNA-(apurinic or apyrimidinic site) lyase; Belongs to the FPG family.
     
 0.611
Gobs_3310
PFAM: Squalene/phytoene synthase; KEGG: mjl:Mjls_5455 phytoene synthase.
 
   
 0.604
Gobs_3309
TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sen:SACE_1713 phytoene desaturase.
 
  
 0.549
Gobs_4788
PFAM: beta-Ig-H3/fasciclin; SMART: beta-Ig-H3/fasciclin; KEGG: sgr:SGR_5876 hypothetical protein.
 
  
 0.495
Gobs_0116
KEGG: mva:Mvan_1931 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; GAF domain protein; Sulfate transporter/antisigma-factor antagonist STAS; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing prot [...]
  
 
 0.480
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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