STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_0868KEGG: kra:Krad_0382 hypothetical protein. (320 aa)    
Predicted Functional Partners:
Gobs_3355
KEGG: nfa:nfa23230 hypothetical protein.
 
    0.839
Gobs_0867
KEGG: cms:CMS_2945 hypothetical protein.
 
     0.815
Gobs_3665
KEGG: mkm:Mkms_0818 putative DNA helicase.
  
    0.779
Gobs_3698
TIGRFAM: RecB family nuclease, putative; KEGG: tgr:Tgr7_1784 hypothetical protein.
  
    0.779
Gobs_2744
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: rop:ROP_10680 5-deoxy-glucuronate isomerase.
   
    0.706
Gobs_2600
Transposase; KEGG: rha:RHA1_ro10149 transposase.
   
    0.705
Gobs_3530
Transposase; KEGG: rha:RHA1_ro10149 transposase.
   
    0.705
Gobs_4829
KEGG: mjl:Mjls_2771 hypothetical protein.
 
     0.636
Gobs_1322
KEGG: cms:CMS_1037 hypothetical protein.
  
     0.586
Gobs_1320
KEGG: kra:Krad_0808 hypothetical protein.
  
     0.554
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.