Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_0874TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: nca:Noca_0786 SAF domain-containing protein. (215 aa)    
Predicted Functional Partners:
Gobs_3427
PFAM: Flp/Fap pilin component; KEGG: ach:Achl_2643 Flp/Fap pilin component.
 
  
 0.853
Gobs_0116
KEGG: mva:Mvan_1931 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; GAF domain protein; Sulfate transporter/antisigma-factor antagonist STAS; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing prot [...]
  
    0.824
Gobs_0594
PFAM: Type II secretion system F domain; KEGG: tfu:Tfu_0126 putative integral membrane protein.
 
  
 0.785
Gobs_0873
Hypothetical protein; KEGG: cdi:DIP0859 large-conductance mechanosensitive channel.
       0.773
Gobs_3423
KEGG: art:Arth_2924 Flp pilus assembly protein ATPase CpaE-like protein.
 
  
 0.717
Gobs_0593
KEGG: nfa:nfa3600 hypothetical protein.
 
  
 0.713
Gobs_3420
PFAM: Type II secretion system F domain; KEGG: ach:Achl_4446 type II secretion system protein.
 
  
 0.710
Gobs_0875
TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB; KEGG: mjl:Mjls_4670 FmdB family regulatory protein.
  
  
 0.702
Gobs_0591
KEGG: sma:SAV_4605 septum site determining protein.
 
   
 0.673
Gobs_3421
PFAM: Type II secretion system F domain; KEGG: ach:Achl_4445 type II secretion system protein.
 
  
 0.654
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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