Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Gobs_0891KEGG: ace:Acel_0621 hypothetical protein. (352 aa)    
Predicted Functional Partners:
Gobs_0890
TIGRFAM: peptidase S26B, signal peptidase; PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: ace:Acel_0959 peptidase S26B, signal peptidase.
 
   
 0.785
Gobs_0892
KEGG: ace:Acel_0620 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
       0.773
Gobs_0893
KEGG: tgr:Tgr7_3263 VcfQ-like protein.
       0.484
Gobs_0894
SMART: Fibronectin type III domain protein; KEGG: mxa:MXAN_0510 putative cell wall surface anchor family protein.
       0.484
Gobs_0889
KEGG: ace:Acel_0612 hypothetical protein.
       0.470
Gobs_0227
PFAM: glycoside hydrolase family 8; KEGG: mva:Mvan_4861 glycoside hydrolase family protein.
 
   
 0.403
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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