Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Gobs_1002PFAM: protein of unknown function DUF1707; KEGG: fal:FRAAL2404 hypothetical protein. (230 aa)    
Predicted Functional Partners:
Gobs_0043
PFAM: protein of unknown function DUF1707; KEGG: nfa:nfa41690 hypothetical protein.
  
     0.768
Gobs_1001
KEGG: hypothetical protein.
       0.560
Gobs_3016
KEGG: fre:Franean1_1748 tetratricopeptide domain- containing protein.
  
     0.479
Gobs_2073
KEGG: fal:FRAAL4541 putative transcriptional regulator.
  
     0.466
Gobs_0579
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: saq:Sare_0041 XRE family transcriptional regulator.
  
     0.439
Gobs_3927
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: mab:MAB_3067c hypothetical protein.
 
  
 0.436
Gobs_2368
PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: nca:Noca_2244 peptidase M23B.
  
     0.433
fumC
Fumarate lyase; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.432
Gobs_2432
KEGG: fra:Francci3_0218 putative serine/threonine kinase anti-sigma factor.
  
     0.407
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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