STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1007KEGG: cmi:CMM_0897 hypothetical protein. (519 aa)    
Predicted Functional Partners:
Gobs_4393
KEGG: nfa:nfa9540 hypothetical protein.
  
     0.761
Gobs_5081
Glycoprotein; KEGG: rha:RHA1_ro03643 glycoprotein.
  
     0.752
Gobs_1124
KEGG: sen:SACE_1036 hypothetical protein.
  
     0.747
Gobs_0773
KEGG: sen:SACE_3415 hypothetical protein.
  
     0.741
Gobs_1468
KEGG: sen:SACE_1520 hypothetical protein.
  
     0.738
Gobs_4594
KEGG: cur:cur_0218 hypothetical protein.
  
     0.731
Gobs_1368
KEGG: mpa:MAP2328c hypothetical protein.
  
     0.729
Gobs_0469
KEGG: mab:MAB_0267 hypothetical protein.
  
     0.728
Gobs_1467
KEGG: hau:Haur_4814 hypothetical protein.
  
     0.717
Gobs_0030
KEGG: mpa:MAP0012c hypothetical protein.
  
     0.702
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.