STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1112KEGG: fre:Franean1_5744 hypothetical protein. (219 aa)    
Predicted Functional Partners:
Gobs_1111
TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: ach:Achl_2862 signal peptidase I; Belongs to the peptidase S26 family.
       0.773
Gobs_1113
PFAM: multicopper oxidase type 2; multicopper oxidase type 3; multicopper oxidase type 1; Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: ach:Achl_2863 bilirubin oxidase.
       0.773
Gobs_1110
PFAM: Radical SAM domain protein; KEGG: sco:SCO7402 lyase.
       0.508
Gobs_1114
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: nca:Noca_2634 ATPase domain-containing protein.
       0.490
Gobs_1115
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: tth:TTC0668 two-component response regulator.
       0.490
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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