Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_1122PFAM: O-methyltransferase family 3; KEGG: nfa:nfa47280 putative O-methyltransferase. (216 aa)    
Predicted Functional Partners:
Gobs_0468
PFAM: O-methyltransferase family 3; KEGG: fal:FRAAL5009 caffeoyl O-methyltransferase (partial match).
  
     0.733
Gobs_1123
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sma:SAV_3117 RNA polymerase sigma factor SigE; Belongs to the sigma-70 factor family. ECF subfamily.
     
 0.582
Gobs_1124
KEGG: sen:SACE_1036 hypothetical protein.
       0.521
Gobs_1888
KEGG: saq:Sare_1473 hypothetical protein.
  
    0.449
Gobs_1126
PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: fre:Franean1_0887 sec-independent translocase.
       0.448
Gobs_1125
PFAM: peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: sen:SACE_1034 possinble serine protease.
       0.434
Gobs_1645
Protein of unknown function DUF558; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
  
    0.421
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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