STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1207PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: gbm:Gbem_1827 alpha amylase catalytic region; Belongs to the glycosyl hydrolase 13 family. (745 aa)    
Predicted Functional Partners:
Gobs_1957
KEGG: cms:CMS_1526 putative sugar synthase; TIGRFAM: malto-oligosyltrehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
 
 0.991
Gobs_4101
KEGG: ace:Acel_0678 trehalose synthase; TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain.
 
 
0.963
Gobs_5011
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
 0.955
Gobs_1952
KEGG: nfa:nfa18050 putative glycosyl hydrolase; TIGRFAM: malto-oligosyltrehalose trehalohydrolase; PFAM: alpha amylase catalytic region; glycoside hydrolase family 13 domain protein; SMART: alpha amylase catalytic sub domain.
  
  
 
0.927
Gobs_0089
PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: mva:Mvan_5750 kojibiose phosphorylase.
  
 
 0.926
Gobs_2716
PFAM: glycoside hydrolase family 65 central catalytic; glycoside hydrolase family 65 domain protein; KEGG: rop:ROP_54720 putative glycosidase.
  
 
 0.926
Gobs_5004
PFAM: Nucleotidyl transferase; KEGG: ddr:Deide_17490 putative glucose-1-phosphate adenylyltransferase (ADP-glucose diphosphorylase, ADP- glucose synthase).
 
  
 0.907
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
  
 0.896
Gobs_4099
KEGG: fra:Francci3_3664 alpha-glucan phosphorylase; TIGRFAM: alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35.
 
 
 0.887
Gobs_3079
PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: art:Arth_4088 alpha amylase, catalytic region.
 
  
 0.788
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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