Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1328KEGG: sco:SCO0775 hypothetical protein. (153 aa)    
Predicted Functional Partners:
Gobs_4304
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: rop:ROP_63740 LPPG--FO 2-phopspho-L-lactate transferase.
 
   
 0.784
Gobs_2574
KEGG: rop:ROP_01680 hypothetical protein.
  
   
 0.762
Gobs_0158
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sgr:SGR_5629 MarR family transcriptional regulator.
 
      0.759
Gobs_4305
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: mav:MAV_4225 F420-0--gamma-glutamyl ligase.
  
   
 0.754
Gobs_4515
TIGRFAM: probable F420-dependent oxidoreductase; KEGG: rop:ROP_19710 putative oxidoreductase.
  
   
 0.741
Gobs_1327
PFAM: glutathionylspermidine synthase; KEGG: nfa:nfa41710 hypothetical protein.
       0.730
fbiD
2-phospho-L-lactate guanylyltransferase CofC; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.
 
   
 0.728
Gobs_3680
TIGRFAM: F420-dependent oxidoreductase, G6PDH family; PFAM: Luciferase-like, subgroup; KEGG: sgr:SGR_6674 putative dehydrogenase.
  
   
 0.718
Gobs_0488
TIGRFAM: PPOX class probable F420-dependent enzyme; PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: rha:RHA1_ro02455 hypothetical protein.
  
     0.629
Gobs_3560
TIGRFAM: HhH-GPD family protein; PFAM: HhH-GPD family protein; KEGG: sma:SAV_4172 hypothetical protein.
 
     0.508
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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