STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1417PFAM: bifunctional deaminase-reductase domain protein; KEGG: nca:Noca_4888 deaminase-reductase domain- containing protein. (187 aa)    
Predicted Functional Partners:
Gobs_3191
PFAM: bifunctional deaminase-reductase domain protein; KEGG: rxy:Rxyl_2316 bifunctional deaminase- reductase-like protein.
  
     0.759
Gobs_3877
PFAM: bifunctional deaminase-reductase domain protein; KEGG: mpl:Mpal_1101 riboflavin biosynthesis protein RibD.
 
     0.710
Gobs_2032
KEGG: bcv:Bcav_1817 riboflavin biosynthesis protein RibD.
 
     0.682
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
  
  
 0.545
Gobs_1418
PFAM: alpha/beta hydrolase fold; KEGG: stp:Strop_1065 alpha/beta hydrolase fold.
       0.438
Gobs_1415
KEGG: kra:Krad_2033 hypothetical protein.
       0.406
Gobs_1416
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: rer:RER_11250 Xre family DNA-binding protein.
       0.406
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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