STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1452Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; KEGG: mbt:JTY_1081 hypothetical protein. (77 aa)    
Predicted Functional Partners:
Gobs_1453
PFAM: TrwC relaxase; SMART: AAA ATPase; KEGG: nca:Noca_1102 exonuclease V subunit alpha.
 
     0.768
Gobs_0858
PFAM: TrwC relaxase; KEGG: nca:Noca_1102 exonuclease V subunit alpha.
  
     0.625
Gobs_0116
KEGG: mva:Mvan_1931 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; ATP- binding region ATPase domain protein; GAF domain protein; Sulfate transporter/antisigma-factor antagonist STAS; PAS fold domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; response regulator receiver; SMART: response regulator receiver; protein phosphatase 2C domain protein; PAC repeat-containing protein; histidine kinase A domain protein; GAF domain protein; PAS domain containing prot [...]
  
 
 0.591
Gobs_2022
PFAM: TrwC relaxase; KEGG: nca:Noca_1721 exonuclease V subunit alpha.
  
     0.590
Gobs_4696
KEGG: mgi:Mflv_3422 hypothetical protein.
  
   
 0.567
Gobs_0016
PFAM: TrwC relaxase; KEGG: nca:Noca_1102 exonuclease V subunit alpha.
  
     0.560
Gobs_0685
KEGG: nca:Noca_1570 hypothetical protein.
  
     0.547
Gobs_4162
PFAM: GCN5-related N-acetyltransferase; KEGG: bja:blr2886 hypothetical protein.
  
     0.511
Gobs_0747
PFAM: TrwC relaxase; DNA primase catalytic core domain; TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: nca:Noca_4800 DNA primase catalytic core.
  
     0.487
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
  
 
 0.468
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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