STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1755PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: mjl:Mjls_4766 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Gobs_1754
TIGRFAM: iron-sulfur cluster binding protein; PFAM: protein of unknown function DUF162; KEGG: fal:FRAAL3348 putative Fe4-S4 ferredoxin.
 
 0.998
Gobs_1753
PFAM: protein of unknown function DUF162; KEGG: fal:FRAAL3347 hypothetical protein.
 
 0.968
Gobs_1756
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: rha:RHA1_ro04084 LacI family transcription regulator.
  
    0.782
Gobs_4802
L-lactate transport; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
  
 0.606
Gobs_4538
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: ace:Acel_0284 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
  
  
 0.444
Gobs_5038
PFAM: FAD dependent oxidoreductase; KEGG: sen:SACE_6515 glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.406
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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