Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Gobs_1815PFAM: Protein of unknown function DUF2505; KEGG: ach:Achl_1296 proteinase inhibitor I25 cystatin. (394 aa)    
Predicted Functional Partners:
Gobs_1816
KEGG: tro:trd_A0188 hypothetical protein.
       0.610
Gobs_2469
KEGG: kra:Krad_4493 hypothetical protein.
  
     0.524
Gobs_4365
KEGG: nca:Noca_3496 hypothetical protein.
  
     0.518
Gobs_1361
KEGG: fal:FRAAL3774 hypothetical protein.
  
     0.515
Gobs_2787
KEGG: kra:Krad_4493 hypothetical protein.
  
     0.488
Gobs_1117
KEGG: kra:Krad_4493 hypothetical protein.
  
     0.484
Gobs_1468
KEGG: sen:SACE_1520 hypothetical protein.
  
     0.466
Gobs_0596
PFAM: TadE family protein; KEGG: kra:Krad_0480 TadE family protein.
  
     0.448
Gobs_1817
KEGG: sco:SCO5659 integral membrane protein.
       0.443
Gobs_3785
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: fal:FRAAL5813 hypothetical protein.
  
     0.440
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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