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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1908phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (446 aa)    
Predicted Functional Partners:
Gobs_1906
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: rha:RHA1_ro02858 phenylacetate-CoA oxygenase subunit PaaB.
 
 
 0.991
Gobs_1907
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: sen:SACE_3544 phenylacetate-CoA oxygenase subunit PaaA.
 
 
 0.988
Gobs_0467
PFAM: thioesterase superfamily protein; KEGG: mta:Moth_0402 phenylacetic acid degradation protein PaaD.
 
 
 0.986
Gobs_1904
TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; KEGG: sen:SACE_3547 phenylacetic acid degradation protein.
 
  
 0.986
Gobs_1905
TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: sen:SACE_3546 putative phenylacetic acid degradation protein.
 
 
 0.986
Gobs_1903
TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sen:SACE_3548 putative phenylacetic acid degradation NADH oxidoreductase.
 
 
 0.977
Gobs_1543
PFAM: Amidase; KEGG: nca:Noca_3358 amidase; Belongs to the amidase family.
    
 0.907
Gobs_2037
PFAM: Amidase; KEGG: saq:Sare_0864 amidase.
    
 0.907
Gobs_0303
PFAM: Amidase; KEGG: aau:AAur_pTC20148 amidase; Belongs to the amidase family.
    
  0.903
Gobs_2094
PFAM: Amidase; KEGG: tro:trd_A0461 glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A); Belongs to the amidase family.
    
  0.903
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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