Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_1920PFAM: beta-lactamase domain protein; KEGG: rop:ROP_33350 hypothetical protein. (320 aa)    
Predicted Functional Partners:
Gobs_1919
PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sen:SACE_3057 pentachlorophenol monooxygenase.
 
    0.950
Gobs_1916
Fumarylacetoacetase; KEGG: sen:SACE_3942 putative fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: Domain of unknown function DUF1969; fumarylacetoacetate (FAA) hydrolase.
 
     0.839
Gobs_1917
KEGG: mab:MAB_0889c hypothetical protein.
 
    0.817
Gobs_1918
PFAM: homogentisate 12-dioxygenase; Cupin 2 conserved barrel domain protein; KEGG: sen:SACE_3944 homogentisate 1,2-dioxygenase.
 
    0.807
Gobs_1915
PFAM: Aldehyde Dehydrogenase; KEGG: art:Arth_3511 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.547
Gobs_1921
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: aau:AAur_pTC20083 putative transcription regulator.
       0.473
Gobs_1914
PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: nfa:nfa27820 putative transcriptional regulator.
 
     0.453
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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