Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Gobs_1949PFAM: PilT protein domain protein; KEGG: cti:RALTA_B2161 putative toxin of a toxin/antitoxin system. (128 aa)    
Predicted Functional Partners:
Gobs_1948
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
    0.949
Gobs_1597
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
    0.787
Gobs_4124
Prevent-host-death family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
    0.777
Gobs_1950
KEGG: rer:RER_22200 hypothetical protein.
       0.773
Gobs_1947
PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: stp:Strop_1546 ATP-dependent DNA ligase.
       0.540
vapC-2
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.520
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.445
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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