Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1972KEGG: fal:FRAAL5367 hypothetical protein. (82 aa)    
Predicted Functional Partners:
Gobs_1971
KEGG: fal:FRAAL5368 hypothetical protein.
       0.799
Gobs_0747
PFAM: TrwC relaxase; DNA primase catalytic core domain; TOPRIM domain protein; SMART: Toprim sub domain protein; KEGG: nca:Noca_4800 DNA primase catalytic core.
  
     0.511
Gobs_0066
KEGG: mlu:Mlut_22710 hypothetical protein.
  
     0.473
Gobs_0678
Transcriptional regulator, SARP family; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: nca:Noca_2229 peptidoglycan-binding LysM.
  
     0.443
Gobs_2082
KEGG: kra:Krad_1096 hypothetical protein.
  
     0.437
Gobs_1970
PFAM: Abortive infection protein; KEGG: nfa:nfa11920 hypothetical protein.
  
     0.430
Gobs_4126
PFAM: Protein of unknown function DUF2071; KEGG: sgr:SGR_3185 hypothetical protein.
  
     0.415
Gobs_2307
KEGG: fre:Franean1_5320 hypothetical protein.
  
     0.412
Gobs_2034
PFAM: protein of unknown function DUF1486; KEGG: gvi:glr0227 hypothetical protein.
  
     0.405
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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