Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1990KEGG: sma:SAV_489 hypothetical protein. (259 aa)    
Predicted Functional Partners:
Gobs_1989
KEGG: amr:AM1_6084 hypothetical protein.
 
     0.857
Gobs_1988
PFAM: major facilitator superfamily MFS_1; KEGG: ara:Arad_9746 florfenicol/chloramphenicol resistance transporter protein.
 
     0.573
Gobs_3446
KEGG: art:Arth_1421 hypothetical protein.
  
     0.411
Gobs_1679
KEGG: amr:AM1_6084 hypothetical protein.
 
     0.401
Gobs_3540
KEGG: amr:AM1_6084 hypothetical protein.
 
     0.401
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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