STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Gobs_1998KEGG: ddr:Deide_3p02352 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Gobs_1683
KEGG: sma:SAV_489 hypothetical protein.
  
     0.733
Gobs_1680
KEGG: sma:SAV_489 hypothetical protein.
  
     0.730
Gobs_3539
KEGG: sma:SAV_489 hypothetical protein.
  
     0.727
Gobs_4221
KEGG: sma:SAV_489 hypothetical protein.
  
     0.722
Gobs_1997
PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: rha:RHA1_ro02951 oxidoreductase, Zn-binding.
       0.645
Gobs_2867
KEGG: nca:Noca_4866 CdaR family transcriptional regulator.
  
     0.499
Gobs_2940
KEGG: nca:Noca_4866 CdaR family transcriptional regulator.
  
     0.464
Gobs_1996
Transcriptional regulator, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: fre:Franean1_1585 transcriptional regulator.
       0.449
Your Current Organism:
Geodermatophilus obscurus
NCBI taxonomy Id: 526225
Other names: G. obscurus DSM 43160, Geodermatophilus obscurus ATCC 25078, Geodermatophilus obscurus DSM 43160, Geodermatophilus obscurus IFO 13315, Geodermatophilus obscurus JCM 3152, Geodermatophilus obscurus NBRC 13315, Geodermatophilus obscurus NRRL B-3577, Geodermatophilus obscurus VKM Ac-658, Geodermatophilus obscurus str. DSM 43160, Geodermatophilus obscurus strain DSM 43160
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